PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017689m
Common NameCICLE_v10017689mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 362aa    MW: 39481.2 Da    PI: 8.9031
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017689mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.24.5e-1822106276
         trihelix   2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                      Wt +e+++Liea++ ++er  +++           ++ +W++v +++ ++g+ rs++qC++kw+nl ++yk++++ e+k  s ss
  Ciclev10017689m  22 WTVSETMVLIEAKQMDDERRMKRSsgessesrgkPAELRWKWVEDYCCRKGCLRSQNQCNDKWDNLMRDYKRVRDYERKLLSSSS 106
                      *************96555555321233444444499******************************************9855544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.981488IPR017877Myb-like domain
PfamPF138374.0E-1321102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MADQGGDGGG GTGMREYRKG NWTVSETMVL IEAKQMDDER RMKRSSGESS ESRGKPAELR  60
WKWVEDYCCR KGCLRSQNQC NDKWDNLMRD YKRVRDYERK LLSSSSSPSD HGNIKAENVS  120
YWKMEKNERK EKNLPTNMLP QIYEALVEVV EKKGAGQRVI AGAGVGVSVA SGSHPHVGYM  180
VQPIVAAAPL PPMLQQQQHQ RSAPTTMLQP QPLPLPPLSL QPPPPQPQAA VPTVDSDTSE  240
YSDSPAKRRR RGGTEGGGSG DQQGTSAGAT ATASASTSQE LGTAISKSAS IIADALQSCE  300
EREERRHRDL VSLHERRLKI EESKTEINRE GINGLVDAIN KLANSILALA SSSKNQQSAS  360
K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448736.10.0uncharacterized protein LOC18051386 isoform X2
TrEMBLV4UI410.0V4UI41_9ROSI; Uncharacterized protein
STRINGXP_006448736.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-53Trihelix family protein