PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10017778m

Common Name

CICLE_v10017778mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

BES1

Protein Properties

Length: 224aa MW: 23506 Da PI: 9.8291

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10017778m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	111.8	1.1e-34	8	83	4	80
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeae 80 g +++ E+E++k+RER+RRai++ki+ GLR+ G+y+l raD+neVl+ L++eAGwvve+DGttyr+ + + + Ciclev10017778m 8 GGGRSEGEKEKTKLRERQRRAITTKIFHGLRKWGGYHLSPRADINEVLRQLAQEAGWVVEPDGTTYRARLPMN-QCH 83 44567789***********************************************************554333.333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.3E-32	11	134	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MKAAATSGGG RSEGEKEKTK LRERQRRAIT TKIFHGLRKW GGYHLSPRAD INEVLRQLAQ 60 EAGWVVEPDG TTYRARLPMN QCHVCGGATP TTGSSVVIGG GGSGGDSSTT ASPRHAWLGG 120 EPIPNASTNS SNFAAGGFST SPYYSTDTPL ALYIYDNGLT RGPHSSTTSS IATTTVTSSA 180 VHGGDPAAVT LAMQHQQQQF YNLLEAKASN QNTPVSSPLR RLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448917.1	1e-164	protein BZR1 homolog 2
TrEMBL	V4U899	1e-163	V4U899_9ROSI; Uncharacterized protein
STRING	XP_006448917.1	1e-164	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22944	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	1e-16	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Ciclev10017778m
Entrez Gene	18052207