PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017809m
Common NameCICLE_v10017809mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 270aa    MW: 30127.6 Da    PI: 7.0007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017809mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.76.1e-3612109197
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCaaCk++rrkC++dCv+ pyfp +q+++f+ vhk+FG+sn++k++k+l++ + r++a++s+ +eA ++ +dPv+G +g ++kl+++ e l + 
  Ciclev10017809m  12 ACAACKHQRRKCTQDCVFPPYFPGNQSEEFQLVHKIFGVSNLSKIIKNLETPQdRQEAVESIKWEAAMWEQDPVHGPLGAYRKLEREFEALMKM 105
                      7************************************************66555*********************************9998765 PP

           DUF260  94 lall 97 
                       +++
  Ciclev10017809m 106 KNQQ 109
                      5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.56411113IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3412107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MANNGELGNR YACAACKHQR RKCTQDCVFP PYFPGNQSEE FQLVHKIFGV SNLSKIIKNL  60
ETPQDRQEAV ESIKWEAAMW EQDPVHGPLG AYRKLEREFE ALMKMKNQQQ TSQQIIDYGR  120
GPVMTTSGLI SYPTSQQEQA HVINSNEAPH AFIDQKFNTF GQPSDADHNR SGPTMVGHSY  180
NSPINDNNLV QIMEQQGPRA RQRRGIATSG DMAINDGQLP RVGGECYDGV TSYYAPTLPS  240
SSHSQLSGPY AQLPYLHINI NGFAPRREI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-231312112117LOB family transfactor Ramosa2.1
5ly0_B6e-231312112117LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4TQB40.0V4TQB4_9ROSI; Uncharacterized protein
STRINGXP_006449443.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1960367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-27LOB domain-containing protein 2