PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017867m
Common NameCICLE_v10017867mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 226aa    MW: 25808.8 Da    PI: 7.7311
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017867mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-3292145255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH +Fv+ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ+YR+
  Ciclev10017867m  92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.62888148IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-3088146IPR009057Homeodomain-like
SuperFamilySSF466898.96E-1590146IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-2392147IPR006447Myb domain, plants
PfamPF002494.1E-993144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRTDLEIQCR QEKSDRSEEQ AENTSVVSPQ KWSCFDLNLN EEASCSEEDD VLANAAEDDD  60
KRTDHLEGST SCSTNNNERR STVRQYVRSK MPRLRWTPDL HLSFVHAVER LGGQEKATPK  120
LVLQLMNVRG LSIAHVKSHL QMYRSKKLDE AGQVLSHAYR SIHGRDHIRG IYHQPVITSP  180
HHHFRLENGG IVLASNNFHE NSITRNILQS PISQRPLDFK STFSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-1893147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1893147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1893147357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1893147357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-1893147458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449512.21e-165uncharacterized protein LOC18051238
TrEMBLV4U9V51e-168V4U9V5_9ROSI; Uncharacterized protein
STRINGXP_006449512.11e-168(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.18e-40G2-like family protein