PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018117m
Common NameCICLE_v10018117mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 442aa    MW: 49443.9 Da    PI: 6.9263
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018117mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-12207296289
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-.TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgr.yvlt.kGWkeFvkangLkegDfvvFkldgrse 89 
                      +k+l++sdv+++gr++lpk+ aee+  +++ +e++ ++++d  s + W++k++   +s + +  + + + +Fvk+ngL+ gD+++++ d  ++
  Ciclev10018117m 207 QKALKNSDVGSLGRIILPKREAEENlpSLSDKEGIHIVIRDvYSVKHWTLKFNQFSSSVStFS-RfRYTVDFVKQNGLEIGDSLTLYED--ES 296
                      799************************66667899******5555*******44333333233.247899****************933..33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-16202298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-12205297No hitNo description
SMARTSM010191.9E-11206309IPR003340B3 DNA binding domain
PROSITE profilePS508639.037206309IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-12206298IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-9207297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
CLYFHFNIME NNFFPASNNN TATTATANNN TINTFTNQQL SQPSMAYTQN SQLYLPTYYH  60
QNMQYPSTFP LDQSGGQSFA AAAAAAAPYP VYPFWLAQNG IQNGGGNNAL PAAAGSWSLQ  120
PHIRVPKEPQ RVVLDPQKTK IARIKRKLAR QKSLSLQRNA SSGASSSNVP SSAHFDATRL  180
PTYGVDTHRD LFNFCTPDNK RLRVLLQKAL KNSDVGSLGR IILPKREAEE NLPSLSDKEG  240
IHIVIRDVYS VKHWTLKFNQ FSSSVSTFSR FRYTVDFVKQ NGLEIGDSLT LYEDESKNLG  300
QYFSVKKVER PEPAAEPSYK QQNYDFFPAA NQTPTPIMHQ ARDEEEASLA LLIEQLRHKE  360
QQETYYNLMT LPLDDHEEAN NVVRASNNAT SSGIHAHLAA TSSSSHGAKM NNPEYDHHQT  420
VDDCYSCLDM LPDVDTYNFS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-371963053110B3 domain-containing transcription factor LEC2
6j9c_D4e-371963053110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046749.10.0B3 domain-containing transcription factor LEC2
TrEMBLV4TQ060.0V4TQ06_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006449368.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.11e-40B3 family protein