PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018130m
Common NameCICLE_v10018130mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 296aa    MW: 32770.3 Da    PI: 4.6881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018130mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19137187255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrd      k +r +lg+f+taeeAa a+++a+++++g
  Ciclev10018130m 137 HYRGVRRRP-WGKYAAEIRDS---SrKGARAWLGTFDTAEEAALAYDKAALRIRG 187
                      7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31136196IPR001471AP2/ERF domain
CDDcd000183.72E-30137195No hitNo description
PfamPF008477.3E-14137187IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-23137196IPR016177DNA-binding domain
SMARTSM003804.6E-37137201IPR001471AP2/ERF domain
PROSITE profilePS5103223.736137195IPR001471AP2/ERF domain
PRINTSPR003671.1E-10138149IPR001471AP2/ERF domain
PRINTSPR003671.1E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATQQNDHDA APESILENVW ANFIGSSEDG RIQRSGTSDA SEFSKSSSWE EMPSLDGSVE  60
ILERLPSLGR WISMGAEAWE ELLDGIIPTT KESYKCNTTG DDSKICRINS NTASSAEPGP  120
NKMNAMRVEK VATSTRHYRG VRRRPWGKYA AEIRDSSRKG ARAWLGTFDT AEEAALAYDK  180
AALRIRGPKA HLNFPLEEVA NNAMATEFSG AGFNNLSMMT ISQENDNISS SRNRKRTSRE  240
WEYQNIGATN YMMIDEPAIP IMRTASMESA FGHELDVLEF QDLGSEYLDS LLSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-27136197465ATERF1
3gcc_A7e-27136197465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449445.10.0ethylene-responsive transcription factor ERF091
TrEMBLV4UEV90.0V4UEV9_9ROSI; Uncharacterized protein
STRINGXP_006449445.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-33ERF family protein