PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018138m
Common NameCICLE_v10018138mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22460.7 Da    PI: 5.9706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018138mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45e-253886149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     krien+s r+v fskRr+g++KKA+EL+ LCdae+a+i+fs++g+ly +
  Ciclev10018138m 38 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDAEIAIIVFSPKGRLYSF 86
                     79*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-313089IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.6753090IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-253195IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-233252IPR002100Transcription factor, MADS-box
PfamPF003191.2E-243986IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-235267IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-236788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAAKAESSRS LPPSWVSSTV IMPKKKPKGT GRKKIEIKRI ENNSSRKVAF SKRRKGMFKK  60
ASELCRLCDA EIAIIVFSPK GRLYSFGDHV IDKFIEDEIV SDIHSSSSSK EAIKENDCVT  120
ELTGEEKSEE EDTREEQTEL EFWWEQPIED LNMEELEKYK SCLEELRRNV AMKVEEMVMR  180
RTCEKDFLGI RDKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-1431113285Myocyte-specific enhancer factor 2B
1tqe_Q2e-1431113285Myocyte-specific enhancer factor 2B
1tqe_R2e-1431113285Myocyte-specific enhancer factor 2B
1tqe_S2e-1431113285Myocyte-specific enhancer factor 2B
6c9l_A2e-1431113285Myocyte-specific enhancer factor 2B
6c9l_B2e-1431113285Myocyte-specific enhancer factor 2B
6c9l_C2e-1431113285Myocyte-specific enhancer factor 2B
6c9l_D2e-1431113285Myocyte-specific enhancer factor 2B
6c9l_E2e-1431113285Myocyte-specific enhancer factor 2B
6c9l_F2e-1431113285Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449753.11e-139agamous-like MADS-box protein AGL28
TrEMBLV4TR251e-137V4TR25_9ROSI; Uncharacterized protein
STRINGXP_006449753.11e-138(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-22AGAMOUS-like 62