PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018158m
Common NameCICLE_v10018158mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 331aa    MW: 36354.8 Da    PI: 10.0326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018158mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-2094143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f tae Aa+a++aa+++++g
  Ciclev10018158m  94 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFETAEAAAAAYDAAALRFKG 143
                      7********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3293152IPR001471AP2/ERF domain
PfamPF008471.8E-1394143IPR001471AP2/ERF domain
SMARTSM003804.2E-3694157IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2294152IPR016177DNA-binding domain
CDDcd000181.02E-2194152No hitNo description
PROSITE profilePS5103225.02794151IPR001471AP2/ERF domain
PRINTSPR003672.8E-1195106IPR001471AP2/ERF domain
PRINTSPR003672.8E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSNKNKRARI NKVDRRHGKR PLPFDVSEEK KEDEISSSVN QSSHQAQVLD SSAATVPPGS  60
AVHVTATSAG YRPSHGQNTS QRTQDQGNIV RRRHYRGVRQ RPWGKWAAEI RDPNKAARVW  120
LGTFETAEAA AAAYDAAALR FKGSKAKLNF PERVQAPPDL HHLGYINIAA SSKNNNNSRT  180
VISQQPQSVI INNPLPQVPS PPALSHHHMM PHYSPSYDHH QTFPNLFQYA QLLSSNNIDN  240
AVNQYAAPAL YYGQDYPPLM FPSSSSSSTS SSSSISQTHH QNQLEQELFR LSSSSSSQVG  300
NFSSAAASNT TTTTALDEQE RNSSGNNQKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2593154163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.32890.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046519.10.0ethylene-responsive transcription factor ERF114
TrEMBLV4TIF40.0V4TIF4_9ROSI; Uncharacterized protein
STRINGXP_006446923.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-22related to AP2 6l