PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018239m
Common NameCICLE_v10018239mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 133aa    MW: 15209.5 Da    PI: 10.2421
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018239mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.65.9e-2520105190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +fYneYAk+vGFsvr+++skks ++gei+++++ Cskeg +++e  +   ++r+r + r gCkakl + k+k+g+++ + +e++HnH+l+
  Ciclev10018239m  20 EFYNEYAKKVGFSVRINSSKKS-HTGEIVRKEYICSKEGATTKEVVE---KKRRRGKVREGCKAKLAMVKSKSGTYVASVFEEDHNHPLT 105
                      6*****************9999.8999**************999766...8999999*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2220105IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MNDIGIDTGE KFVLLDDVHE FYNEYAKKVG FSVRINSSKK SHTGEIVRKE YICSKEGATT  60
KEVVEKKRRR GKVREGCKAK LAMVKSKSGT YVASVFEEDH NHPLTTPRRF SIMILHLMSG  120
SRLKSNLEFN LKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389930.19e-61protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4UBQ97e-93V4UBQ9_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006448360.11e-93(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-12FAR1 family protein