PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018266m

Common Name

CICLE_v10018266mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 155aa MW: 18052.5 Da PI: 4.6115

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018266m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.1	2.2e-16	80	150	2	72
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +Y++YA+++GF vr+++ +++ ng+it rt+vCs+eg+r + + +++er+ r+ trt+C+a++ + +++ Ciclev10018266m 80 YYRQYARKAGFGVRRHNIRRN-VNGNITGRTWVCSREGFRPAKYLQkKSREREARPLTRTSCQAQFCIILNS 150 8************999998.8999*********98876553688999*********99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-14	80	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MNNSNEEQED RDDLEYPVTI EADIYGQWNV SSNDEGEAHN DDFGSIELQT DINNEMGTNQ 60 TEIDQQQCRE FESEEQAETY YRQYARKAGF GVRRHNIRRN VNGNITGRTW VCSREGFRPA 120 KYLQKKSRER EARPLTRTSC QAQFCIILNS ETNR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387794.1	5e-79	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024041910.1	5e-79	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4TF85	1e-110	V4TF85_9ROSI; Uncharacterized protein
STRING	XP_006445808.1	1e-111	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-10	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018266m
Entrez Gene	18051915