PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018310m

Common Name

CICLE_v10018310mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 194aa MW: 21863 Da PI: 9.9192

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018310m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.5	2.6e-14	1	65	10	90
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 vGFsvr+++s+ks ++gei+++++vCskeg +++ + gCkakl v k+k+g+++v+ +e++HnH+l+ Ciclev10018310m 1 VGFSVRINSSRKS-HTGEIVRKEYVCSKEGATTK---------------ELGCKAKLAVVKSKSGTYVVSVFEEDHNHPLT 65 7********99.8899********8776...............47**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-11	1	65	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
VGFSVRINSS RKSHTGEIVR KEYVCSKEGA TTKELGCKAK LAVVKSKSGT YVVSVFEEDH 60 NHPLTTPRRV HLLRSYRNVS EAKRSLTHQL AAANIPIHQQ ISVLELQAGG MQNIGCLGKD 120 LYNDETKSKN KVKGHDADML LEHFELEKEK NSAFTYTIES DNENRITHCF WADATSRRVL 180 LLKKRECRRA LKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389930.1	1e-121	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4U9P8	1e-141	V4U9P8_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006449442.1	1e-142	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-24	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10018310m
Entrez Gene	18053404