PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018915m
Common NameCICLE_v10018915mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 795aa    MW: 86645.9 Da    PI: 6.3487
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018915mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.4e-3091175187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+ qe+laL+++r++m+ ++r++  k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Ciclev10018915m  91 RWPSQETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 175
                      8*********************************************************************866665..*******85 PP
2trihelix103.61.4e-32523608187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k evlaLi++r+ +e+r++++  k+plWee+s  m++ g++r++k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a
  Ciclev10018915m 523 RWPKVEVLALIKLRSGLEHRYQEAGPKGPLWEEISVGMQRMGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDAKTCPYFHELDA 608
                      8********************************************************************97.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01288150IPR001005SANT/Myb domain
PROSITE profilePS500906.49390148IPR017877Myb-like domain
CDDcd122034.86E-2790155No hitNo description
PfamPF138376.5E-2190176No hitNo description
PROSITE profilePS500906.528516580IPR017877Myb-like domain
SMARTSM007170.022520582IPR001005SANT/Myb domain
CDDcd122034.07E-29522587No hitNo description
PfamPF138375.1E-22522609No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MQQGGGGGGD GEGGGGGGGT QSQYGEMATT STATAAAAAA HIDMGQQPVE AASPISSRPP  60
ASASNLDELM RLSGGDDDEG DRGGGVSSGN RWPSQETLAL LKIRSDMDAA FRDATVKGPL  120
WEDVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF SQLEALYSSP  180
TSTSTSTATT SNVSASLPKP VTTVADTSTL DVAPVSVGIP MPISSSVRIP TSPITLTCFP  240
YHDLRSTLIP PPSSAVNVPG SVTTPVPPTA TTSTTPVGIS FSSKSSSSPE TEDDDEDVMD  300
FEGQPSNTAG TSSRGRNRKR KRQTSSSHRM MAFFEGLMKQ VMQKQEAMQQ SFLEVIEKRE  360
RDRMIREEAW KRQEMSRLAR EHELMAQERA ISASRDASII NFLQKITGQT IQLPPAITIP  420
AAPPPPPPQP QSPSQAVPVA TNTTQSHHMP PPERRDIQQH HHRHQQIQSS AAEAVTARHQ  480
QPSGTVSTSI PSQVVMAVPE QQVPPSDHQE IGSGGNLEPA SSRWPKVEVL ALIKLRSGLE  540
HRYQEAGPKG PLWEEISVGM QRMGYNRNAK RCKEKWENIN KYFKKVKESN KRRPEDAKTC  600
PYFHELDALY RKKIIGVGGT STSSQNRPEE RHQSQSEQQH QQENVNPVTN PQESSINVLP  660
APLLITQAHS DSENKNGNAQ ASNVGVTGSL FGEGNLGASK KPEDIVKELM NQQGTQQKQQ  720
QPQASIVDDQ FDKVEESNMG SESDNMEYEE DERDDDEESE EDSNKMANYK VEFQRQNTSN  780
GGGNGAPSFL AMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141KRSAKKCKE
2314322GRNRKRKRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439158.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLV4SWV00.0V4SWV0_9ROSI; Uncharacterized protein
STRINGXP_006439158.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-49Trihelix family protein