PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019130m
Common NameCICLE_v10019130mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 691aa    MW: 77162.4 Da    PI: 6.7344
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019130mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-094554921954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Ciclev10019130m 455 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 492
                      554459******************************88 PP
2BELL119.41.6e-38316387172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e++elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi
  Ciclev10019130m 316 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 387
                      679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-61254385IPR006563POX domain
PfamPF075266.1E-48260383IPR006563POX domain
PROSITE profilePS5007112.179433496IPR001356Homeobox domain
SMARTSM003895.8E-9436500IPR001356Homeobox domain
CDDcd000862.62E-11436497No hitNo description
SuperFamilySSF466896.42E-17437502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27439502IPR009057Homeodomain-like
PfamPF059209.4E-18453492IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MARELCEDKS RNIISSGGFC YSDVSSSNPT LHQTHMMNQI QGFEGNHEIF NLTTGMEMIG  60
FSKNLQQHTS DNNSVMWKEF FNNKPAGNNP GPSSSKTINE STTSDHHFYQ HDHQFNKQDF  120
TTGMSETSGE NLIVGHDHSD VAGAWQENNS RLLVDDSSLR CVFPCEGNER PSQGLSLSLS  180
SSNPSSIGLQ SFELRQTNHN DHDHQQDDMR FISSSTSREG FFGKPAAGIQ QQQQMMQDGF  240
LGKPAIPPNI HHQTGHQFQL RNSKYLAPAQ EILKEFCSLG TKQNDATKLK SNKAKQQWDD  300
ENAGSSSRKQ SLCSLEFMEL QKRKTKLLSM LEEVDRRYRH YCDQMKAVVS SFEAVAGNGA  360
ARVYSALASK AMSRHFRCLR DGIVGQIQAT KKAMGEKDPV APGTSRGETP RLKIIDQALR  420
QQRAFQQMSM MESHPWRPQR GLPERSVSVL RAWLFEHFLH PYPSDVDKHI LARQTGLSRS  480
QVSNWFINAR VRLWKPMVEE MYLEETKEQD NNMASSDGAT DLDDNSGRPN QTQNPPADQK  540
PTQDQLVRID SECLSSIINN HDKNDANKNP NKALPSHHMQ QNFGSFGAME LDFSSYNQHT  600
VGGVSYANDS ANHQNFNGGS GGVSLTLGLQ QHGGSGVSLA FSPASQSSLF YPRDHIEDCQ  660
QVQYSLLDGE GQNLPYRNLM GAQLLHDLAG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15442500563Homeobox protein Meis2
3k2a_B2e-15442500563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.225150.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439494.10.0homeobox protein BEL1 homolog isoform X1
SwissprotQ388971e-146BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLV4VJ910.0V4VJ91_9ROSI; Uncharacterized protein
STRINGXP_006439494.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-137TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]