PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019186m
Common NameCICLE_v10019186mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 668aa    MW: 74070.4 Da    PI: 6.0546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019186mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.91.8e-1272856511373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv+lL++c+ea+ s++  ++++++a+l + asp+g+p+ Rl+ay+teALa r++r +++++++ pp++ + +  +++ aal+l+++++Pi+kf 
  Ciclev10019186m 285 LVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFD-RVDDDSGAALRLLNQATPIPKFI 377
                      6899*****************************************************************8.5678888999************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taN+++l+a++g++rvHiiDfdi+qGlQWp+++q+LasRp++p ++RiTg+g+    sk+el+etg+rL+ fAe+l++pfef++ v++rled
  Ciclev10019186m 378 HFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGE----SKQELNETGDRLSGFAEALNLPFEFHP-VVDRLED 466
                      *******************************************************....***************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      ++l++L+vk++E++aVn+++qlh++l +        +++L l++s++P++v ++eqea+hns+ + +r++++l+yysalfd ++  lp +s  r
  Ciclev10019186m 467 VRLWMLHVKEKESVAVNCIFQLHKTLYSGNGG--VLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYCLPLDSPVR 558
                      **************************544433..3589******************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslv.lgWkdrpLvsvSaW 373
                      ik+E++ ++re++++vaceg++r erhe++e+Wr+++e+ GF+ + +se+++ q ++ll++++ + y v+++  +g++v l W d+pL++vSaW
  Ciclev10019186m 559 IKIEEM-FAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCENYGVKKQgqDGAAVtLSWIDQPLYTVSAW 651
                      ******.********************************************************88899996555666666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.805259629IPR005202Transcription factor GRAS
PfamPF035146.3E-125285651IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE ASAQFPACHF QLPSMGTQRL DLPCSFSRKD SSRSQPIRPV  60
GLSVEKPIEP KTSACSLKQN VRLPPLATST QREIKDEFWE KGKSLKRFAE GGLVDESCIN  120
RAKRKKGSSG DNDGKNDDIH EGGGDSLSLG QLGTGNFWFQ PSFTGQNVPQ VPFTLTCSGE  180
KDRVCYVPGE FISPPLPLSN NPWVESVITE ITDLGEKDGD ETSHRLAKEV SASSTSSESG  240
SLALRLHENP VEHDVGNGSR NPYPHQGGVE ASEEGTNQGE NGFELVRLLT DCVEAIGSRN  300
IPAVNHFIAK LGDVASPRGS PISRLTAYYT EALALRVSRL WPHTFHITPP RDFDRVDDDS  360
GAALRLLNQA TPIPKFIHFT ANEMLLRAFD GKDRVHIIDF DIKQGLQWPS FFQSLASRPN  420
PPSHVRITGI GESKQELNET GDRLSGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKEKESV  480
AVNCIFQLHK TLYSGNGGVL RDFLGLIRST NPTIVLMAEQ EAEHNSPFLE TRVSNSLRYY  540
SALFDLIDYC LPLDSPVRIK IEEMFAREVR SIVACEGSDR LERHESFENW RRMMEQGGFR  600
CMGISEREML QSQMLLKMYS CENYGVKKQG QDGAAVTLSW IDQPLYTVSA WVPVDVAGGS  660
SSFSQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6827765311380Protein SCARECROW
5b3h_A1e-6827765310379Protein SCARECROW
5b3h_D1e-6827765310379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440546.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLV4TV810.0V4TV81_9ROSI; Uncharacterized protein
STRINGXP_006440546.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein