PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019397m
Common NameCICLE_v10019219mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 598aa    MW: 66992.6 Da    PI: 5.0077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019397mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-054124451755
                      HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      N++f  Lr+++P  +       ++Ka+iL  +++Y+k+L+
  Ciclev10019397m 412 NEKFMVLRSMVPYiS------EVDKASILSDTIKYLKKLE 445
                      99***********66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3512137IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.064395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-6403449No hitNo description
SMARTSM003534.6E-6405450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-9410461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8412454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MQFSGHYQLH NKGLQRSKQL RELYESLLKG ESELAYKRPS AALSPEDLTD AEWYYLVCMS  60
FVFSSGQGLP GRALANSETI WLCNAQCADS KVFSRSLLAK SASIQTVICF PHLDGVIELG  120
VTELVPEDPS LLQHIKASLL DFSKPFCSEK SSSPPYDEDD DSDPLCAKVS HEILDTVALE  180
SLYSPGEENK FDGEGVYELH GNINEELHLD SADECSKGCE HNHQTEESFM VDGINGAASQ  240
VQSWHFVDDD LSNGIPDSMH SSDHKSESLV NQAEGFPSSK DENMSHIQLK ELQEGNHTKL  300
SLLDLGIVDG AHYRKTLSAI FGSSNRLTEN PCFLSVEHKS SFVSWKKGGM VKRHWPGIQQ  360
NLLKKILFSV PLMHGGCTHR SQKEICRKYC PVTMESDNFC EEHISSDKRT ENEKFMVLRS  420
MVPYISEVDK ASILSDTIKY LKKLEARVEE LESCMYSVDS EPRPKRNYTE MVEQTSDNYD  480
NKKLDNHKKP WINKRKACDI DETDPELNKF VPKDGLADVK VSIQEMDVLI EMRCPSREYI  540
LLDIMDAINN LHLDAYSVVS SNLDGVLTLA LKSTFRGAAI APAGIIEQAL WKIAGKC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6458110.0EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445042.10.0transcription factor EGL1 isoform X1
RefseqXP_006491098.10.0transcription factor EGL1
TrEMBLV4VXZ20.0V4VXZ2_9ROSI; Uncharacterized protein
STRINGXP_006491098.10.0(Citrus sinensis)
STRINGXP_006445042.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-118bHLH family protein