PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019558m
Common NameCICLE_v10019558mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 555aa    MW: 61446 Da    PI: 7.4043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019558mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-1732122199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+++ +d   s +l lp kfae  + +   +k+ ++ed+sg  Wev +  ++ +g+  +++GW+ F   ++L+ gDf+vF +++ s+f   v
  Ciclev10019558m  32 FFKIMIGKDC--SEILFLPPKFAEMVSAV--IGKKAVIEDSSGDCWEVSV--SNVDGSPAFRQGWNAFSAYHRLEIGDFLVFDYIRGSRF--IV 117
                      7788855444..4579*******999866..7889***************..99999****************************98999..** PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+f+k
  Ciclev10019558m 118 KIFDK 122
                      ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2126125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-2128125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.12530123IPR003340B3 DNA binding domain
CDDcd100172.34E-1830121No hitNo description
SMARTSM010194.4E-1132123IPR003340B3 DNA binding domain
PfamPF023621.2E-1332122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGGKLEACAE CTKKCLLVHR NKAKLSPVIH SFFKIMIGKD CSEILFLPPK FAEMVSAVIG  60
KKAVIEDSSG DCWEVSVSNV DGSPAFRQGW NAFSAYHRLE IGDFLVFDYI RGSRFIVKIF  120
DKTGCEKQKI SLTTNKRKRY RTRTNFTDRE GQCYTADTGS MSKERKNART TTNSTDRDGQ  180
CHTADKDSMS KERSRPSIFS VSDEEMSESQ CELNDVEKAS TSNGKISGKR PLSVSRANFL  240
EDPYYLIDRD LGDQQREDRC SVFDLSHFEM VGNNCGTAIR DKMKDGDDYS HHADASLISE  300
FEDVLVNKYL VDKEIPNRVA ASDASDMDVM KNNGVEKTEQ IISRVELQKD GGNNSNVSSG  360
VSQKCHGAEE ESKALSKSKR KTDRATVSPM ECNQSEHLKF IGTFRESSVQ VTTGMQNCRF  420
VEPQTDGWTS SSSSRGVPKK CHGGVEELKA VSKSLTEIDW AMVSPVEYNR SAQLKLVGQY  480
GESRVQVTSG MQNCQFELLT KVHQGMVSQT GCTSLGDSNQ SAQLNFVGEF GGSSVLVTHG  540
MQKGQFGKRV FLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440024.20.0uncharacterized protein LOC18050177
TrEMBLV4VKM60.0V4VKM6_9ROSI; Uncharacterized protein
STRINGXP_006440024.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-14B3 family protein