PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019730m
Common NameCICLE_v10019730mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 520aa    MW: 58176.6 Da    PI: 6.7995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019730mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13342387454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Ciclev10019730m 342 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVAYIKEL 387
                      799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-4924210IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-18337401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.72E-15341391No hitNo description
Gene3DG3DSA:4.10.280.101.5E-17342403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-17344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MEEIVSSSSS SYPMPFCQET SPTLQQRLQF IVQNRPEWWV YSIFWQPLKD VNGRLVLSWG  60
DGYFRGSKDF ATRAAAGKQG AGNEPKFGFF LERKKVSKEV QVHFGEDMDL DRMVDGDVTD  120
GEWYYTVSVT RSFAIGDGSA LGRVFSSGDY VWLTGDHELQ LYECERVKEA RMHGIQTLVC  180
VSTACGVVEL GSSDLIKEDW SLVQLAKSLF GPVIATMLTK QVNLNSESQL QLPNPTTRNN  240
NNTNNVAPLL DIGMFSGAGA PHHHHHHHQK EWSLEENSKQ QTREVSGDVI KKEQLAAGFG  300
RSSSDSGPSD SDGHFVSGFT DINVTSKKRG RKPTSGRESP LNHVEAERQR RERLNHRFYA  360
LRSVVPNVSK MDKASLLADA VAYIKELRAK VDELEAKLRE QARKSKVVYN VYDNNQSTGS  420
TIMMPTSSST THHLGININI MDVDVKIVGS EAMIRVQCPD INYPAAKLMD VLRDLEFHVH  480
HASVSSVRET MLQDVVVRIP EGLISEEVIR SAIFQRMQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-26182103192Transcription factor MYC3
4rqw_B2e-26182103192Transcription factor MYC3
4rs9_A2e-26182103192Transcription factor MYC3
4yz6_A2e-26182103192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.136090.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045664.10.0transcription factor MYC2
TrEMBLA0A2H5QJH80.0A0A2H5QJH8_CITUN; Uncharacterized protein
TrEMBLV4SX110.0V4SX11_9ROSI; Uncharacterized protein
STRINGXP_006439218.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.13e-59NACL-inducible gene 1