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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Ciclev10019777m |
| Common Name | CICLE_v10019777mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
GRAS |
| Protein Properties |
Length: 510aa MW: 56940.3 Da PI: 7.4415 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10019777m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 373 | 4e-114 | 136 | 508 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPi 90
lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La rla+ + + + +++ps + ++ s e+ a++l +e++P
Ciclev10019777m 136 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASvQPLGAVGSFAPSMNI-MDiagSREKEEAFRLVYEICPH 228
689***************************************************93223344444443333.2257899999************ PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
++f+h++aN+ Ilea+ege+ vH++D++++ Gl QW L+++La+R+++pp +lRiT+vg e+ +++g+ L+++A++ g+++ef+
Ciclev10019777m 229 IQFGHFVANSSILEAFEGESFVHVVDLGMTLGLprgqQWRRLIESLANRAGQPPrRLRITAVGL----CVEKFQSIGDELKDYAKTYGINLEFS 318
***************************9886533333*************877779********....************************** PP
GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
v v+++le+l++++++v ++E+l+Vn++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a
Ciclev10019777m 319 V-VESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDA 408
9.7********************************88877777...8*********************************************** PP
GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++ + +qa+ l++ k +gy+v ee+g+lvlgWk++p
Ciclev10019777m 409 MLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMK--MINQAQKWLKNNKvCEGYTVVEEKGCLVLGWKSKP 500
*******************************************************96..678999999999999******************** PP
GRAS 367 LvsvSaWr 374
++++S+W+
Ciclev10019777m 501 IIATSCWK 508
*******8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MVYDFLFNTH KLYNDQRSNQ AIGLQLGLSI VDCYPYLPMM SDNSAASSMI LQPRDQKRLK 60 RTISVGDGSP TSTLSRSSST SSLSNLPRLQ FRDHIWTYTR RYLAAEAVEE AAAAMIKSED 120 GCDGDQQDGT ADGMRLVQLL IACAEAVACR DKSHASALLS ELRANALVFG SSFQRVASCF 180 VQGLADRLAS VQPLGAVGSF APSMNIMDIA GSREKEEAFR LVYEICPHIQ FGHFVANSSI 240 LEAFEGESFV HVVDLGMTLG LPRGQQWRRL IESLANRAGQ PPRRLRITAV GLCVEKFQSI 300 GDELKDYAKT YGINLEFSVV ESNLENLQTK DIKVLENEVL VVNSILQLHC VVKESRGALN 360 SVLQIIHELS PKVLVLVEQD SSHNGPFFLG RFMEALHYYS AIFDSLDAML PKYDTKRAKI 420 EQFYFAEEIK NIVSCEGPAR VERHERVDQW RRRMSRAGFQ AAPMKMINQA QKWLKNNKVC 480 EGYTVVEEKG CLVLGWKSKP IIATSCWKC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GU072592 | 0.0 | GU072592.1 Citrus trifoliata GRAS family transcription factor mRNA, complete cds. |