PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019777m
Common NameCICLE_v10019777mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 510aa    MW: 56940.3 Da    PI: 7.4415
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019777mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3734e-1141365081374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPi 90 
                      lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La rla+ +  + + +++ps +  ++   s e+  a++l +e++P 
  Ciclev10019777m 136 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASvQPLGAVGSFAPSMNI-MDiagSREKEEAFRLVYEICPH 228
                      689***************************************************93223344444443333.2257899999************ PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                      ++f+h++aN+ Ilea+ege+ vH++D++++ Gl    QW  L+++La+R+++pp +lRiT+vg       e+ +++g+ L+++A++ g+++ef+
  Ciclev10019777m 229 IQFGHFVANSSILEAFEGESFVHVVDLGMTLGLprgqQWRRLIESLANRAGQPPrRLRITAVGL----CVEKFQSIGDELKDYAKTYGINLEFS 318
                      ***************************9886533333*************877779********....************************** PP

             GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      v v+++le+l++++++v ++E+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a
  Ciclev10019777m 319 V-VESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDA 408
                      9.7********************************88877777...8*********************************************** PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                       lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  + +qa+  l++ k  +gy+v ee+g+lvlgWk++p
  Ciclev10019777m 409 MLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMK--MINQAQKWLKNNKvCEGYTVVEEKGCLVLGWKSKP 500
                      *******************************************************96..678999999999999******************** PP

             GRAS 367 LvsvSaWr 374
                      ++++S+W+
  Ciclev10019777m 501 IIATSCWK 508
                      *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.061110489IPR005202Transcription factor GRAS
PfamPF035141.4E-111136508IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MVYDFLFNTH KLYNDQRSNQ AIGLQLGLSI VDCYPYLPMM SDNSAASSMI LQPRDQKRLK  60
RTISVGDGSP TSTLSRSSST SSLSNLPRLQ FRDHIWTYTR RYLAAEAVEE AAAAMIKSED  120
GCDGDQQDGT ADGMRLVQLL IACAEAVACR DKSHASALLS ELRANALVFG SSFQRVASCF  180
VQGLADRLAS VQPLGAVGSF APSMNIMDIA GSREKEEAFR LVYEICPHIQ FGHFVANSSI  240
LEAFEGESFV HVVDLGMTLG LPRGQQWRRL IESLANRAGQ PPRRLRITAV GLCVEKFQSI  300
GDELKDYAKT YGINLEFSVV ESNLENLQTK DIKVLENEVL VVNSILQLHC VVKESRGALN  360
SVLQIIHELS PKVLVLVEQD SSHNGPFFLG RFMEALHYYS AIFDSLDAML PKYDTKRAKI  420
EQFYFAEEIK NIVSCEGPAR VERHERVDQW RRRMSRAGFQ AAPMKMINQA QKWLKNNKVC  480
EGYTVVEEKG CLVLGWKSKP IIATSCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6214350726378Protein SCARECROW
5b3h_A2e-6214350725377Protein SCARECROW
5b3h_D2e-6214350725377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0725920.0GU072592.1 Citrus trifoliata GRAS family transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440048.10.0DELLA protein RGL1
TrEMBLV4SZK70.0V4SZK7_9ROSI; Uncharacterized protein
STRINGXP_006440048.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16018814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-79RGA-like 1