PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019943m
Common NameCICLE_v10019943mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 480aa    MW: 53581.4 Da    PI: 6.7321
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019943mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.11.9e-23199252155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k++l Wt+eLH++F++av+ L G++ A Pk+il++m+v+gL  e++ SHLQkYRl
  Ciclev10019943m 199 KQKLTWTSELHNKFLQAVRVL-GIDGAHPKKILQHMNVPGLKKENISSHLQKYRL 252
                      79*******************.********************************8 PP
2Response_reg49.81.9e-17241321109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vli+d + + + +l ++l+  gy ev +a+ + +a   +  ++ + D+il    +p+md +ell++ re + klp+i+++a ++e+d+l al  
  Ciclev10019943m  24 VLIMDGDSTCLVILSKMLRWFGY-EVLTAKRAADAFYVVrgCADELDIILAETHLPDMDKYELLETVREMS-KLPVIFMSADDNENDMLGALFK 115
                      89*********************.***************666677************************99.********************** PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga+ +l+Kp++++++ +
  Ciclev10019943m 116 GADFYLVKPISMSDIKN 132
                      ***********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-2520139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-2621168No hitNo description
SMARTSM004487.9E-1722134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.04323138IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-1324132IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.10E-1925138No hitNo description
SuperFamilySSF466893.58E-17197256IPR009057Homeodomain-like
PROSITE profilePS512949.353198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-24198256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-20199252IPR006447Myb domain, plants
PfamPF002491.5E-6202251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNGEKAISVE SGRSAMLPPR GISVLIMDGD STCLVILSKM LRWFGYEVLT AKRAADAFYV  60
VRGCADELDI ILAETHLPDM DKYELLETVR EMSKLPVIFM SADDNENDML GALFKGADFY  120
LVKPISMSDI KNLWQFAFTK KTDKMVATEG VSSISSDDTD NHILPNKWKK SHQDPKRKEA  180
TEVDKNVGGV NDDASVLKKQ KLTWTSELHN KFLQAVRVLG IDGAHPKKIL QHMNVPGLKK  240
ENISSHLQKY RLSLKRAQDA IGKTVNRDYS ESQVALCNLS STSNIQGGLF QFPEMQTMTA  300
CHQPEVGIQE QKNDVNCCIL VPSASSIHFL NNGGWSCNDT SDCKYEQLAP AINQLDFSYP  360
CSRHARIGIT SNDKLAGFHQ MVKSNGEELL IGKMASSINV DSRLDIGMQV PSSLNQQEEK  420
DQRWQKNFPP GPAPLYPEEY DVYGAGKVEL DMKKVSTQLF LVRILMISGR FYVILLPVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16198256462ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445166.20.0two-component response regulator ARR2 isoform X1
TrEMBLV4U8800.0V4U880_9ROSI; Uncharacterized protein
STRINGXP_006445166.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1721079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-52response regulator 1