PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020034m
Common NameCICLE_v10020034mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 467aa    MW: 52376.6 Da    PI: 6.9692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020034mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.21.4e-321632681100
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  Ciclev10020034m 163 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGvGDlA 256
                      89****************************66677899*************************************************666999* PP

                      EE..EEEEE-SS CS
               B3  89 efelvvkvfrks 100
                      +++l++ ++r+s
  Ciclev10020034m 257 KGRLFIDWRRRS 268
                      *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-41158271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-30160251IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-27161250No hitNo description
SMARTSM010191.3E-23163268IPR003340B3 DNA binding domain
PfamPF023625.5E-30163268IPR003340B3 DNA binding domain
PROSITE profilePS5086314.847163268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEFGSSSNSY SNRERLICEE DEMIGIDYEM GNIISNTGSN QAVKLHFSTT YASNSSSSPS  60
SASSHHHHHH HQYTTQTQQL LPLTTHHQNY NKQQQQPQMG SWLLGKTTTT TTAAELEDVS  120
NEEETAAPTK EQAIIMQETK DIIEEGEAEE DRVLISLEKE HMFDKVVTPS DVGKLNRLVI  180
PKQHAEKYFP LDSSSNEKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKDKKL  240
DAGDVVSFHR GVGDLAKGRL FIDWRRRSHP PAAAAASFSR HLPFYRSIPW NPLLMMRPPV  300
LPASMYSQSQ INNNFYNRNS ISLGGTGNNN NVLSTRTLGS ILYLRSQLPA APAIQQQPPP  360
PPPHTEIGMT KWQQHPIVFD SVPVVQGKAT AKRLRLFGVN MDCPITESDD ECHILSSSTS  420
IQHATMAIHD QPSQLSSSSQ LSLYDATPLL PPFDFLNKGK ASMSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-651582673113B3 domain-containing transcription factor NGA1
5os9_B7e-651582673113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439180.10.0B3 domain-containing protein Os03g0120900
RefseqXP_024044687.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR92e-76Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLV4TL840.0V4TL84_9ROSI; Uncharacterized protein
STRINGXP_006439180.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-66B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]