PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020307m
Common NameCICLE_v10020307mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 422aa    MW: 47756.4 Da    PI: 4.4434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020307mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.1e-1871116148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+e+++++++ lG++ W++Ia+ m+ gRt++++k++w+++l
  Ciclev10020307m  71 RGNITAEEEEIIIKLHASLGNR-WSLIASNMP-GRTDNEIKNYWNSHL 116
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4952965IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-105278IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2052124IPR009057Homeodomain-like
PROSITE profilePS5129426.6866120IPR017930Myb domain
SMARTSM007171.8E-1770118IPR001005SANT/Myb domain
PfamPF002491.2E-1571116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2279116IPR009057Homeodomain-like
CDDcd001674.45E-784116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEVTAQECWL VMSFPLPFSS KLTCVDIHRW FPFHETLIFS FFFFLWFKGL LRCGKSCRLR  60
WINYLRADLK RGNITAEEEE IIIKLHASLG NRWSLIASNM PGRTDNEIKN YWNSHLSRKI  120
HTFWRPSSEK TLPVKVDVAA AGTGVASDRK AGKKIGSAIM KNKSHSKKDG NINIGTEEIV  180
AKDGNINIGT EEIVASIEED IPLPATPTLE KETLPSTALV GCMDLDSFAE DKETTDKIVR  240
SPCRQEDNGL DSSEVREKSV LCSGEETRIN NKSMLCRTGE EKETEILEPF EGIDDAKLCF  300
NDLLDPNEVW TLMEEKDTRV TNTFEGRQIG NNVPTSEELV SANGDSVSLR SCSSVNSFFD  360
DSNFDWDWEN VIQDYDPQRD ENENVLSWLW ESGDKDEPKS HEGEDETDCE KQNAMVAWLL  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-185212240110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444460.20.0transcription factor MYB11 isoform X1
TrEMBLV4U6B90.0V4U6B9_9ROSI; Uncharacterized protein
STRINGXP_006444461.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2279534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-40myb domain protein 12