PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020440m
Common NameCICLE_v10020440mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 404aa    MW: 44464 Da    PI: 6.0593
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020440mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.1e-081760340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ +  k+++++C  ++ +lC+ C  + H+       H++v
  Ciclev10020440m 17 ARACDGCLLKRARWYCVADDAFLCQGCDASVHSAnqlasrHERV 60
                     578*****************************667888888876 PP
2CCT68.32.1e-23347390144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Ciclev10020440m 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
                      9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-101562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2961562IPR000315B-box-type zinc finger
CDDcd000216.18E-71862No hitNo description
PfamPF006432.6E-61860IPR000315B-box-type zinc finger
PfamPF062035.3E-18347389IPR010402CCT domain
PROSITE profilePS5101716.083347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMTGEKRTAN AMGGKTARAC DGCLLKRARW YCVADDAFLC QGCDASVHSA NQLASRHERV  60
RLETASSCNN NNKLINEHTD KDTVPVWHQG FTRKARTPRH NNNKAMLVQQ AKANEPLVPE  120
IGCEDGSLQA DDQVIDEQLL YQVPVFDPFE AVEPDENLIV DGYNGQDGTG DLDDLHGFLP  180
SDLDLAEFAA DVESLLGGGG GALDEDSCDV KEFGTLLDCK EEETIALNLK IKAEEVEEAV  240
IAAATREAID CNFDYQSPVT GDDTAGLMST ECKPKLMRNV CLKLNYDAVI TAWASQGCPW  300
TAGSRPEINL NHCWPHCTGL CCKDVHHHTC GGGAVLRGCH LGAGGGREAR VSRYREKRRT  360
RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT SFMGSANDAL QYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357373RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440964.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLV4VMY60.0V4VMY6_9ROSI; Uncharacterized protein
STRINGXP_006440964.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-90B-box type zinc finger protein with CCT domain