PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020450m
Common NameCICLE_v10020450mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 402aa    MW: 45180.8 Da    PI: 7.5234
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020450mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.52.3e-32132236199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  Ciclev10020450m 132 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRGvGElG 225
                      89****************************66677899*************************************************6669999 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l++ ++r+
  Ciclev10020450m 226 KDRLYIDWRRR 236
                      99999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-41125237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-30129220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-26130219No hitNo description
PROSITE profilePS5086314.945132237IPR003340B3 DNA binding domain
PfamPF023621.0E-29132236IPR003340B3 DNA binding domain
SMARTSM010193.3E-23132237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMNFVQEEKG NSNNNNEEDQ DEDHQKERIK LPFSVSSSSS SVSSSKYKAF VPHHHQNSWL  60
LGPIDSQEAA TNFDNREDLM DLSLGNNNNN NEDQPHKHSG NINNANVANG TGSSTTGESS  120
GMYRSIEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSSNEKGLL LNFEDRNGKA  180
WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDTVSFQRG VGELGKDRLY IDWRRRPDVH  240
HVPDPTTLAQ MQFQNQLRFQ QSLRWGTRLY SLPQSLSNYG PFSYNTIHNP YYQHHQQQQI  300
LGFGGNASST MPVQYYLRPS SVSQQIEGGH MPMVIDSVPV VVPGKTASST AAKRLRLFGV  360
NMDCPTQDDQ SPATSSSSTR QAAASEYSSK GKSSLSFDLD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-671272393116B3 domain-containing transcription factor NGA1
5os9_B3e-671272393116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444697.10.0B3 domain-containing protein Os03g0120900
RefseqXP_006444698.10.0B3 domain-containing protein Os03g0120900
RefseqXP_006491400.10.0B3 domain-containing protein Os03g0120900
RefseqXP_024948291.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR98e-82Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A067H3S60.0A0A067H3S6_CITSI; Uncharacterized protein
TrEMBLA0A2H5NY270.0A0A2H5NY27_CITUN; Uncharacterized protein
TrEMBLV4U6Y00.0V4U6Y0_9ROSI; Uncharacterized protein
STRINGXP_006491400.10.0(Citrus sinensis)
STRINGXP_006444696.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-75B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]