PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020499m
Common NameCICLE_v10020499mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 395aa    MW: 44743.8 Da    PI: 6.5623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020499mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027258280123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k+F++   L  H  +H
  Ciclev10020499m 258 YKCETCKKVFKSYQALGGHRASH 280
                      9************9999998887 PP
2zf-C2H2120.00063316338123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C ++Fs+   L  H rtH
  Ciclev10020499m 316 HECPVCFRVFSSGQALGGHKRTH 338
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.24E-5330No hitNo description
PfamPF139122.9E-4427IPR007087Zinc finger, C2H2
SMARTSM003550.37426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139123.2E-11258282IPR007087Zinc finger, C2H2
SMARTSM003550.023258280IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.26E-7258280No hitNo description
PROSITE profilePS5015710.034258285IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-7311338No hitNo description
PfamPF139124.3E-11315338IPR007087Zinc finger, C2H2
SMARTSM003550.15316338IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452316338IPR007087Zinc finger, C2H2
PROSITE patternPS000280318338IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEKHKCRLCF KNFSNGRALG GHMRSHMLNL PIPQKIQEEE EEREHRPHHQ QLSFEIETES  60
ASSPSSSTSP SEEDDEEKSL FYGLRENPKR SIRLVDPEFS FGVVDASAAA AAAASASVVL  120
QDRESETESS KNPTRRRSKR TRKLEQQHRQ ELDIIKKLKL NKSKNTIESS LWGHEPEPVS  180
SISDTTTEED VAYCLMMLSR DKWKRKEKQQ QHHHDLIMFR QQDDDEYEDE EAEKSMDETD  240
ESEEFKSFNN KNRSRGKYKC ETCKKVFKSY QALGGHRASH KKIKFYTPVQ ETELDQENAG  300
ASINLASPPL SVKKVHECPV CFRVFSSGQA LGGHKRTHVT GLVASTSARS ASASTKLGEN  360
LIDLNLPAPI DDDDISQIEL SAVSDAEFVN HIKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134158RRRSKRTRKLEQQHRQELDIIKKLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445328.10.0zinc finger protein ZAT9
TrEMBLV4TDZ70.0V4TDZ7_9ROSI; Uncharacterized protein
STRINGXP_006490850.10.0(Citrus sinensis)
STRINGXP_006445328.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-52C2H2-like zinc finger protein