PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020532m
Common NameCICLE_v10020532mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 390aa    MW: 43238 Da    PI: 6.9749
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020532mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40151228178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC++ l +ak+yhrrhkvCevhskap+v v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Ciclev10020532m 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 228
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33146213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.248149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-38150231IPR004333Transcription factor, SBP-box
PfamPF031102.3E-31152225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEIGGNIFIR EDTGNSNNNN SNNLAWENMW ALNNHSRFDL GNSSSLYATA EITSTTHTSE  60
GNAAHALMFP HGQSLYAGDG SNLHPDPHLM CLKLGKRHYF EDATATSIGD RGFSMVKKGK  120
PYYTFASAGG GGVGPSSSSP VLVTSTATVP RCQVEGCHVP LINAKDYHRR HKVCEVHSKA  180
PKVKVLGLEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSHES LSRNSSQVNE  240
LMTGRFPFPS PTGRALSLLS SKAESWVSSS DLSSRCSAAL RELIAENRAA IVARHLILDS  300
RDWHLHLAND GETQMVCSTS MTSSHQYQML TEQHNWGRYQ QTNTHVTLDL MQAPTEDLGF  360
LSVRGETKDE EEEEECSEIW SSLEGDHLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301522251184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.47260.0fruit
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445345.10.0squamosa promoter-binding-like protein 7
RefseqXP_006464841.10.0squamosa promoter-binding-like protein 7 isoform X1
TrEMBLV4U3D10.0V4U3D1_9ROSI; Squamosa promoter-binding protein 6
STRINGXP_006464841.10.0(Citrus sinensis)
STRINGXP_006445345.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15613914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.18e-36squamosa promoter binding protein-like 3