PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020555m
Common NameCICLE_v10020314mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 387aa    MW: 41323 Da    PI: 9.3383
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020555mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.84.4e-22243305163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK+ae eeL +kv++L  eN +Lk+e+++l+++++kl++e+
  Ciclev10020555m 243 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 305
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.8E-34194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-14127196No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-17237303No hitNo description
PfamPF001704.5E-20243305IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-20243307IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.622245308IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11246303No hitNo description
CDDcd147021.27E-19248296No hitNo description
PROSITE patternPS000360250265IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGNNEDGKSF KSEKPSSPPP SDQGNIHMYT DWAAMQAYYG PRVAIPPYYN SPIASGHAPQ  60
PYMWGPAQPM MPPYGAPYAA IYSTGGVYAH PAVPLGSHAH NHGVPTSPAA VTPLNTEAPT  120
KSSGNADRGL AKKLKGLDGL AMSIGNASAE SAEGGAEQRP SQSEADGSTD GSDGNTVRAG  180
QSRKKRSREG TPIAGKPVGP VLSPGMPTKL ELRNAPGMNV KASPTSVPQP CAVLPPETWI  240
QNERELKRER RKQSNRESAR RSRLRKQAEA EELSRKVDSL IDENASLKSE INQLSENSEK  300
LRQENAALLE KLKSAQLGNK QEIVLNEDKR VTPVSTENLL SRVNNSGTVD RNMEEGGHLF  360
EKNSNSGAKL HQLLDASPRT DAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259265RRSRLRK
2259266RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920462e-72KR492046.1 UNVERIFIED: Citrus sinensis clone 215-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948279.10.0common plant regulatory factor 1 isoform X3
SwissprotQ990891e-133CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A067HEU00.0A0A067HEU0_CITSI; Uncharacterized protein
TrEMBLV4TX680.0V4TX68_9ROSI; Uncharacterized protein
STRINGXP_006491223.10.0(Citrus sinensis)
STRINGXP_006444896.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.18e-96G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]