PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020863m
Common NameCICLE_v10020863mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 354aa    MW: 39245.3 Da    PI: 9.4602
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020863mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.72.7e-2242133187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                      +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ + +++k+   s+ ss++++f++++a
  Ciclev10020863m  42 CWSHDETVALIDAYRDKWYALRRGNLKATHWQEVADAVgrrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFSSSWVHFKRMDA 133
                      8***********************************9977666677799*************************9779************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2241134No hitNo description
PROSITE profilePS500906.0443103IPR017877Myb-like domain
SMARTSM005951.5E-1350139IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSSPPTPQDP IPQETPPPPP APLPAPPVHT PSVNPRRLPP PCWSHDETVA LIDAYRDKWY  60
ALRRGNLKAT HWQEVADAVG RRCPAASPAK TAVQCRHKME KLRKRYRTEI QRAKSMPLSR  120
FSSSWVHFKR MDAMEKGPSV KADYNSDSGD DDDNDDEDDE DLNQDLYQDR SNFKNGVVNT  180
RSVHNLYRNG INSGPSSGGG SGFRIRIPTG VSIAQPGPKI YAKIGTNPNP NPNPNFNHKP  240
NFGSASGSGS GPAVNYGTRV LRGCDDTGTG MGKREREPVV AEMVAAIRML GDGFVKMEQM  300
KMEMAREIET MRMEMEMKRT EMILDSQQRI VEAFAKAVSE KSKKPKRMPD SES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.41400.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445449.10.0trihelix transcription factor ASIL2
RefseqXP_006464404.10.0trihelix transcription factor ASIL2
TrEMBLA0A067HCG40.0A0A067HCG4_CITSI; Uncharacterized protein
TrEMBLA0A2H5PZN20.0A0A2H5PZN2_CITUN; Uncharacterized protein
TrEMBLV4VYX80.0V4VYX8_9ROSI; Uncharacterized protein
STRINGXP_006464404.10.0(Citrus sinensis)
STRINGXP_006445449.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-75Trihelix family protein