PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021190m
Common NameCICLE_v10021190mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 322aa    MW: 35288.4 Da    PI: 7.1263
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021190mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.7e-17247281135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Ciclev10021190m 247 CSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 281
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.9E-14240278IPR013088Zinc finger, NHR/GATA-type
SMARTSM004014.1E-15241295IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.334241277IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15242304No hitNo description
CDDcd002022.58E-12246293No hitNo description
PfamPF003206.1E-15247281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDFCRNVAVS GDQYQQDQVL SPSSIPPSSS SNLALADPLD DLFPAHTTEV DVSLEWLSIF  60
VEDCLSSSGI CLPASELPTK NNAAATTAAP SPKPLQQQQQ QKESTTTTPS PPPSLEKFVV  120
PGKARSKRKR ASSTAKLTQT STSLSSLTTG CWTTTHNNHP ADTQLFHSDD PPLLQVQQAF  180
WLADSQLIFP KKETTNTNTI NTNSNKKAKA NDGDEEEEEA KEEETEIGKE VEVVQQQQQQ  240
QQQGRRCSHC LSQRTPQWRA GPLGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYLHSN  300
SHKKVLEMRM ALMPSPSSLP K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443395.10.0GATA transcription factor 5
RefseqXP_006479088.10.0GATA transcription factor 5-like
TrEMBLV4TY520.0V4TY52_9ROSI; Uncharacterized protein
STRINGXP_006479088.10.0(Citrus sinensis)
STRINGXP_006443395.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-34GATA transcription factor 1