PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021319m
Common NameCICLE_v10021319mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 306aa    MW: 34105.2 Da    PI: 6.5108
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021319mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.2e-072522852154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  Ciclev10021319m 252 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
                      469*****************************87 PP
2ELK25.43.2e-09206227122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++ ++++E++
  Ciclev10021319m 206 ELKIELKQGFKSRIEDVREEIL 227
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-203478IPR005540KNOX1
PfamPF037903.0E-183677IPR005540KNOX1
SMARTSM012561.1E-2395150IPR005541KNOX2
PfamPF037917.5E-1698149IPR005541KNOX2
PROSITE profilePS512139.132206226IPR005539ELK domain
PROSITE profilePS5007111.71226289IPR001356Homeobox domain
SMARTSM003895.6E-11228293IPR001356Homeobox domain
SuperFamilySSF466894.06E-16228293IPR009057Homeodomain-like
CDDcd000861.27E-11229290No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25233291IPR009057Homeodomain-like
PfamPF059201.0E-17246285IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQEPSLGVMG SSSSGGGGGG GDVSGHHDQT ATVQLIKAEI ASHPLYEQLL AAHVSCLRVA  60
TPIDQLPLID AQLAQSHHVL RSYGSLQQAN NNNNHSLSPH ERQELDNFLA QYLIVLCTFK  120
EQLQQHVRVH AVEAVMGCRE IENTLQALTG VSLGEGTGAT MSDDEDDLHM DFSLDQSASD  180
SHDLMGFGPL LPTETERSLM ERVRQELKIE LKQGFKSRIE DVREEILRKR RAGKLPGDTT  240
SVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK  300
RKSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12229285864Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440504.10.0homeobox protein HD1
SwissprotQ9FPQ81e-165KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLV4TK260.0V4TK26_9ROSI; Uncharacterized protein
STRINGXP_006440502.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-163KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]