PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021422m
Common NameCICLE_v10021422mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 296aa    MW: 33159.8 Da    PI: 4.7041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021422mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20105154255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +g+W+AeIrd + +   r+r++lg+f taeeAa  +++a+ +l+g
  Ciclev10021422m 105 KYRGVRMRP-WGKWAAEIRDpF-Q---RTRVWLGTFETAEEAALVYDQAAIRLKG 154
                      8********.**********55.3...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-32105161No hitNo description
SMARTSM003801.6E-35105168IPR001471AP2/ERF domain
PfamPF008475.8E-13105154IPR001471AP2/ERF domain
PROSITE profilePS5103222.669105162IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21105162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-30105161IPR001471AP2/ERF domain
PRINTSPR003674.1E-11106117IPR001471AP2/ERF domain
PRINTSPR003674.1E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNQLVSSSSG AKYREQRSTT TTVVKPSCSG TKVIRVSVTD GDATESSSDE DEERGARVKK  60
QINEIRIVEC SKSNEISCSE SVKQRMKDRS IPLKKRVGGR SYDNKYRGVR MRPWGKWAAE  120
IRDPFQRTRV WLGTFETAEE AALVYDQAAI RLKGPHAQTN FLRPPQTDQT FDFVTSGYDS  180
EKESQSQTPT SAIPSPTSVL RFHSNEEIEL AKTELFNLES DRCCPSQDSF QIYDSELLDS  240
ATPAPIFFDD KMCVPLLKEN LGDVSVDLGG DFDSCISEWD VDNYFQDPPP LPDSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21106161359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444891.10.0ethylene-responsive transcription factor CRF5
RefseqXP_006491231.10.0ethylene-responsive transcription factor CRF5
TrEMBLA0A067HEU80.0A0A067HEU8_CITSI; Uncharacterized protein
TrEMBLA0A2H5PGZ40.0A0A2H5PGZ4_CITUN; Uncharacterized protein
TrEMBLV4U7K50.0V4U7K5_9ROSI; Uncharacterized protein
STRINGXP_006491231.10.0(Citrus sinensis)
STRINGXP_006444891.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-40cytokinin response factor 5