PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10021483m

Common Name

CICLE_v10020360mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 290aa MW: 33777.5 Da PI: 6.9583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021483m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.7e-11	210	254	1	44
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiL 44 +r++h ++Er+RR+++N+ +++Lr+l+P+a+ + ++ ++ +++L Ciclev10021483m 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAYvQRVKQSNNPSDVL 254 79***************************6523333335555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-9	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.12E-8	208	259	No hit	No description
SuperFamily	SSF47459	2.47E-9	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.347	209	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	210	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEKLQGPINP YFLGDHLSVE CFEQEFINTG ALRFEFEEED EEGPQFTTTP SLEDKMPFLQ 60 MLQSVGTPSV FPFKEPNFQT LLRLQHLKKP WELVSPFMPE MEETQIQALE FESCVTQETL 120 DLHSPVKLET KDLQNPHSVT SCIEGLSSES NQEHIQVQPN SDSVINITHP PQQQIRAKQS 180 QFSKSPPITR EKRKRKRTKP IKNKEEVESQ RMTHIAVERN RRRQMNDHLN TLRSLMPPAY 240 VQRVKQSNNP SDVLNITTKV SFFLSFPSYY ISLKIRFLFS IFFGWWFKG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	199	RKRKRTKP
2	210	221	RMTHIAVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.1548	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444719.1	1e-179	transcription factor bHLH57
Refseq	XP_006491385.1	1e-179	transcription factor bHLH57 isoform X2
TrEMBL	V4TCA2	0.0	V4TCA2_9ROSI; Uncharacterized protein
STRING	XP_006491385.1	1e-179	(Citrus sinensis)
STRING	XP_006444719.1	1e-179	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	9e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021483m
Entrez Gene	18049234