PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021622m
Common NameCICLE_v10021622mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 275aa    MW: 29816.5 Da    PI: 5.0358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021622mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18117167255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Ciclev10021622m 117 SYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRG 167
                      69*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.24E-21116177No hitNo description
PfamPF008471.4E-13117167IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22117177IPR016177DNA-binding domain
PROSITE profilePS5103222.932117175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-30117175IPR001471AP2/ERF domain
SMARTSM003804.7E-37117181IPR001471AP2/ERF domain
PRINTSPR003674.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003674.5E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MESSCLQISA ESPFNSSAFD DQSFSWDELL FSHNSSLPFN INDSEETLLL DVLAEGTTTG  60
TTKESSADSN SSNNNNNNNN NNNKEDHEVT SSTSSNYGGG KAAEEEGSSG KTSSDKSYRG  120
VRRRPWGKFA AEIRDSTRNG VRVWLGTFDS AEAAALAYDQ AAFSMRGSLA TLNFPADMVR  180
ESLQEMKYKC EDGCSPVVAL KKRHSIRKKS KSSSSSSVSN KKIKMNNQDR DHHQLAVAVG  240
SQLSQNVVVF EDLGADYLEQ LLMSSCGAAT ATIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28116175160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-28105175272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6363660.0KF636366.1 Citrus sinensis ERF (ERF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443850.10.0ethylene-responsive transcription factor 1B
TrEMBLV4TZ950.0V4TZ95_9ROSI; Uncharacterized protein
STRINGXP_006479550.10.0(Citrus sinensis)
STRINGXP_006443850.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-46ethylene response factor 1