PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021822m
Common NameCICLE_v10021357mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29371.2 Da    PI: 10.1596
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021822mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-3160110151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Ciclev10021822m  60 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 110
                      79***********************************************96 PP
2K-box98.41e-321372231399
            K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +++s +qe+ +Lk  +e Lqr+qR+llGedLe+Ls keL+qLe+qLe+slk++Rs+K++ +++q+++lqk+e+ l e nk Lrkk++
  Ciclev10021822m 137 ETQSTYQEYLRLKTAVELLQRSQRNLLGEDLEPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKVQ 223
                      6899*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-4152111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.20752112IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-3353130IPR002100Transcription factor, MADS-box
CDDcd002659.10E-4153125No hitNo description
PROSITE patternPS00350054108IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-335474IPR002100Transcription factor, MADS-box
PfamPF003192.4E-2661108IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-337489IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-3389110IPR002100Transcription factor, MADS-box
PfamPF014862.7E-27137222IPR002487Transcription factor, K-box
PROSITE profilePS5129715.561138228IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKKDQSWRVS DERTYLTLQC LIIETARLCG KAHKKKKERE RESVCGKKRK IMGRGRVELK  60
RIENKINRQV TFAKRRNGLL KKAYELSVLC DAEVALIIFS NRGKLYEFCS SPSIMKTLER  120
YHRCSFGALE ANRPPIETQS TYQEYLRLKT AVELLQRSQR NLLGEDLEPL STKELEQLEH  180
QLETSLKHVR STKTQCMVDQ LSDLQKREQV LLELNKGLRK KVQSYGFGGG TYSSPCTKCH  240
RIHPWLDALI IIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-27126219198Developmental protein SEPALLATA 3
4ox0_B3e-27126219198Developmental protein SEPALLATA 3
4ox0_C3e-27126219198Developmental protein SEPALLATA 3
4ox0_D3e-27126219198Developmental protein SEPALLATA 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13449KKKERERESVCGKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045679.11e-118MADS-box protein 04g005320 isoform X2
SwissprotQ8LLR27e-90MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLV4TQP10.0V4TQP1_9ROSI; Uncharacterized protein
STRINGXP_006440804.11e-155(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.17e-86MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]