PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021833m
Common NameCICLE_v10021488mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 253aa    MW: 27262.4 Da    PI: 6.688
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021833mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Ciclev10021833m  4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAAnklaskHQRVPL 47
                     6******99*********************66899999999986 PP
2zf-B_box284.5e-095394237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++kC+ ++e    +fC +++ llC++C +++H        H
  Ciclev10021833m 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnsyvsaH 94
                     799*******99*********************554555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000215.10E-8347No hitNo description
PfamPF006434.0E-5447IPR000315B-box-type zinc finger
SMARTSM003366.9E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445299IPR000315B-box-type zinc finger
SMARTSM003368.2E-155299IPR000315B-box-type zinc finger
PfamPF006431.4E-65394IPR000315B-box-type zinc finger
CDDcd000214.00E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MRIQCNVCEA AEAKVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS STQMPKCDIC  60
QETSGFFFCL QDRALLCRKC DVAIHTANSY VSAHQRFLLT GVKVGLEPAD PGASSSSIKS  120
LSGENILDMK SHSLSRRDAL MPVAAECKEV LPASSGGVGD FAMNKVSFAG GSAAGSTPSW  180
HMDDFLALPE LNQNYSFMDN GSSKVTHTYN GKSYLILYVL VGGPLSFEII VVVSLVMFVA  240
SHMQLQFMVK YL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.77010.0fruit
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827009e-43AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442350.11e-144B-box zinc finger protein 22
SwissprotQ9SYM25e-73BBX22_ARATH; B-box zinc finger protein 22
TrEMBLV4U0940.0V4U094_9ROSI; Uncharacterized protein
STRINGXP_006442350.11e-143(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-73light-regulated zinc finger protein 1