PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021843m
Common NameCICLE_v10021843mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 251aa    MW: 27444.7 Da    PI: 6.7863
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021843mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39401411101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ae
  Ciclev10021843m  40 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE 133
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkeel 101
                      l +++++l
  Ciclev10021843m 134 LTMVQNQL 141
                      ****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.08439141IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3940138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAEQQPDPIS EPRRRGAGKR ATTAPSPEAE PMSAPAPAAP CGACKFLRRK CVSGCIFAPH  60
FGSDQGAARF AAVHKVFGAS NVSKLLLHIP VNRRQDAVVT ISYEAQARLS DPVYGCVSTI  120
LALQQQVASL QAELTMVQNQ LLNSRFAMAN ALQTSQQPQQ PQHVALLHQQ QQQPAYSNSS  180
SASTNFINMS NLTSNFDFAA ETVLSCHSME PLHELSRPAH DDEDDEEESQ IPIMFTNDHH  240
QILHNHRRTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-38331474115LOB family transfactor Ramosa2.1
5ly0_B8e-38331474115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443492.10.0LOB domain-containing protein 20
RefseqXP_006479165.10.0LOB domain-containing protein 20
SwissprotQ9SRV32e-77LBD20_ARATH; LOB domain-containing protein 20
TrEMBLV4TTG50.0V4TTG5_9ROSI; Uncharacterized protein
STRINGXP_006479165.10.0(Citrus sinensis)
STRINGXP_006443492.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-64LOB domain-containing protein 20