PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10021846m

Common Name

CICLE_v10021846mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 251aa MW: 28708.7 Da PI: 8.1174

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021846m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.7	2.2e-29	89	177	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GFs+r+ +s+ks+r+g+i++r++ C+keg++++++k+ + + r+r++ r gC+a++ vk+ek g+w+vtk+e+eHnH l Ciclev10021846m 89 FYDEYARRAGFSTRIISSRKSERDGSIISRHLACNKEGFNANRRKSGRVQIRKRESIREGCRAMILVKREKPGRWVVTKFEKEHNHLLL 177 9*******************************************99999*********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-26	89	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MTAIGLHSYI LRGYFLGVKL FFKLLYVVFS SYYCFSVDLE APAEETPAEE KTVITESPTG 60 GESDVCEIDT RREPYEGMVF ESEDAAKIFY DEYARRAGFS TRIISSRKSE RDGSIISRHL 120 ACNKEGFNAN RRKSGRVQIR KRESIREGCR AMILVKREKP GRWVVTKFEK EHNHLLLSSG 180 KDGPSPDEKD RKIRELSMEL HRANQKLEAC QEQLQIVMSY IEEHAKCLSK TVEEAVKDIQ 240 KVESGKQKEP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443020.1	1e-155	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_006478710.1	1e-155	protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4U296	0.0	V4U296_9ROSI; Uncharacterized protein
STRING	XP_006443021.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19294	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-50	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021846m
Entrez Gene	18046815