PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10021853m

Common Name

CICLE_v10021853mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 251aa MW: 28865.5 Da PI: 5.1442

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021853m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	82	172	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ +r++tr gCka++++ ++ gkw vtk++ eHnH+l Ciclev10021853m 82 DFYYEYAKRTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHALrKDRVLPPRPVTREGCKAMIRLAARDGGKWAVTKFVREHNHKLL 172 6***************************************9998823333449********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-24	82	172	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MACSAGHEFI DGEGCSDNDT LENFDEHDTT EDGLLQHYDS HDVINDELNV VIPSMEGFTA 60 DSSESLEPYM GMTFPSLEDA RDFYYEYAKR TGFTIRTNRI RHSLKNMAII GRDFVCSREG 120 FRAAKHALRK DRVLPPRPVT REGCKAMIRL AARDGGKWAV TKFVREHNHK LLTHCKFPGE 180 LPIVNILSEE EKDKKIRDLY NELQRERERS AAIQQQLRLI LKDLEEHAEI MSIRVEDIVN 240 SLREIELDEL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478703.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024044852.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024044853.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A067E5U0	0.0	A0A067E5U0_CITSI; Uncharacterized protein
TrEMBL	V4T7M3	0.0	V4T7M3_9ROSI; Uncharacterized protein
STRING	XP_006478703.1	0.0	(Citrus sinensis)
STRING	XP_006443023.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-46	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021853m
Entrez Gene	18046486