PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10021890m

Common Name

CICLE_v10021891mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 247aa MW: 27845.2 Da PI: 10.473

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021890m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.7	1e-11	122	163	3	51
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ Ciclev10021890m 122 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 163 7998..47*****4.....5******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	8.873	97	176	IPR001471	AP2/ERF domain
Pfam	PF00847	6.1E-6	121	164	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-4	121	178	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-8	122	166	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.0E-6	124	168	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVSLRRRKLL GLCSGKSSFV APLPRTSENG NAPENSTQNI RPISLRPSSL DNVSLQRGIA 60 VEKEGPASSN VSGASSPEQR SKKPKEQHVE NEQHFPSFSG LPIKRRKRHR RKQIQNQEPC 120 LMRGVYFKNM KWQAAIKVDK KQIHLGTVGS QEEAARLYDR AAFMCGREPN FELSEEEKQE 180 LRQFKWDEFL AFTRRSITHK KYKRRVGVGS NKRSESPLEE DGDWDSKQGV NGFSASEEAG 240 QDSSAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443556.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
Refseq	XP_006443557.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
Refseq	XP_006443559.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
Refseq	XP_006479234.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X1
Refseq	XP_006479235.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
Refseq	XP_006479236.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
Refseq	XP_006479237.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
Refseq	XP_024044937.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X1
Refseq	XP_024954446.1	0.0	ethylene-responsive transcription factor-like protein At4g13040 isoform X3
TrEMBL	A0A067FF44	0.0	A0A067FF44_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NJ06	0.0	A0A2H5NJ06_CITUN; Uncharacterized protein
TrEMBL	V4T941	0.0	V4T941_9ROSI; Uncharacterized protein
STRING	XP_006479234.1	0.0	(Citrus sinensis)
STRING	XP_006443556.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6189	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13040.1	8e-51	ERF family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021890m
Entrez Gene	18049185