PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10022068m

Common Name

CICLE_v10022068mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 231aa MW: 24507.8 Da PI: 7.927

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10022068m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.3	1.4e-29	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C ++C ++p++ p+ q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q Ciclev10022068m 4 SCNGCRVLRKGCGENCSIRPCLqwiksPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQ 97 6***********************99************************************************************** PP DUF260 90 lkaelallk 98 +++e++ ++ Ciclev10022068m 98 AAVEAVFRG 106 *998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.454	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRVSCNGCRV LRKGCGENCS IRPCLQWIKS PQCQANATLF LAKFYGRAGL VNLINAGPQD 60 LRPAIFKSLL YEACGRIVNP IYGSVGLMWS GRWHLCQAAV EAVFRGEPVT PLSSESALQA 120 GDIRHVSKDE SSAAAAAGSD KLHKVKSRRF KRSAPKPRSK PERAADAKVV EPLLDNSGGE 180 STSCDPELTQ RDSGEGDSVS VETVEATLAK TDGGADGSDV DLELSLGFGI *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.8416	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440966.1	1e-169	LOB domain-containing protein 41
Swissprot	Q9M886	1e-78	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2H5PM53	1e-167	A0A2H5PM53_CITUN; Uncharacterized protein
TrEMBL	V4TWE0	1e-167	V4TWE0_9ROSI; Uncharacterized protein
STRING	XP_006440966.1	1e-168	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18027	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-77	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Ciclev10022068m
Entrez Gene	18046218