PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022187m
Common NameCICLE_v10022187mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 217aa    MW: 24060.9 Da    PI: 10.2251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022187mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-164292155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr+++ +grWvAeI++ s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Ciclev10022187m 42 SRFLGVRQRP-SGRWVAEIKESS---QKLRLWLGTFDKAEEAAMAYDIAARLLRG 92
                     6788******.7******99932...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.22E-314299No hitNo description
SuperFamilySSF541714.18E-1942100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-2743100IPR001471AP2/ERF domain
SMARTSM003809.1E-3243106IPR001471AP2/ERF domain
PROSITE profilePS5103219.41443100IPR001471AP2/ERF domain
PRINTSPR003674.9E-74455IPR001471AP2/ERF domain
PfamPF008471.8E-104492IPR001471AP2/ERF domain
PRINTSPR003674.9E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDTKKSSKLP PYKSRNPYKN QTLVSLQTNN NNLHENGNRS KSRFLGVRQR PSGRWVAEIK  60
ESSQKLRLWL GTFDKAEEAA MAYDIAARLL RGRNAKTNFI HHGIINFHEE INYSLLGKNP  120
RLHQLLQQAA VTKSHAISSS SKFLNNNMAN RDDESINFDT LVEETIFCSS TSTADCSVKS  180
HGNFDNGLSF GSSKVYSSVV VAPSFSASLC QGSSRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440876.11e-161ethylene-responsive transcription factor ERF112
TrEMBLA0A2H5Q7C41e-159A0A2H5Q7C4_CITUN; Uncharacterized protein
TrEMBLV4TW161e-159V4TW16_9ROSI; Uncharacterized protein
STRINGXP_006440876.11e-160(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11