PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022199m
Common NameCICLE_v10021038mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 216aa    MW: 24284.7 Da    PI: 4.5688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022199mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.21.1e-1520602158
                     -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY 21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                      rsYYrCt++   +C+++k+v+rs+edp+++e+tY+g+H++
  Ciclev10022199m 20 CRSYYRCTYRntqNCWATKQVQRSDEDPSTFEVTYRGTHTC 60
                     6********98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.18E-132060IPR003657WRKY domain
PfamPF031063.8E-142060IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-132060IPR003657WRKY domain
SMARTSM007741.8E-112162IPR003657WRKY domain
PROSITE profilePS5081112.0132158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTFLLTSLIM CFFFFFFGIC RSYYRCTYRN TQNCWATKQV QRSDEDPSTF EVTYRGTHTC  60
FNGSQSVPQP ASPEKHEHKL NHHSDNHQKG SGINSEYLDN KEIASPFSFP TSSLGCMKSN  120
DYCFSSLMLD ENNFLGGFSS SFIPPAAAES NFYYISQNQM NFGDVHNLQQ SESELPELQS  180
ANNSVANSPI LNLDFSIDAA ELDSNFPFDN AGFSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439376.11e-143probable WRKY transcription factor 53
TrEMBLV4VIW11e-158V4VIW1_9ROSI; Uncharacterized protein
STRINGXP_006439376.11e-143(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.26e-26WRKY family protein