PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022244m
Common NameCICLE_v10022244mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 211aa    MW: 23247.7 Da    PI: 6.5194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022244mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-174089255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a+++a++kl+g
  Ciclev10022244m 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGSFNTSLDAALAYDEAARKLYG 89
                     69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-263999No hitNo description
SuperFamilySSF541718.5E-204097IPR016177DNA-binding domain
SMARTSM003804.6E-3240103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-284098IPR001471AP2/ERF domain
PfamPF008474.3E-124089IPR001471AP2/ERF domain
PROSITE profilePS5103220.7454097IPR001471AP2/ERF domain
PRINTSPR003672.4E-84152IPR001471AP2/ERF domain
PRINTSPR003672.4E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEKVSEAASL SQKGTKKPNM GRSRKGCMKG KGGPENVLCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGSF NTSLDAALAY DEAARKLYGD YAKLNLPQVQ QHNRPSSNNI NNNNHITASQ  120
VFTTDHIVPI QQQQQIESSN ESVGNSSRFG ESSVPGHFTS WISGEDNLYW PESLEANDFL  180
DVNDSGVSLS DLMMGGNDLD WDGLQAPRSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443285.11e-157dehydration-responsive element-binding protein 2G
RefseqXP_006478977.11e-157dehydration-responsive element-binding protein 2G
TrEMBLV4TXQ71e-155V4TXQ7_9ROSI; Uncharacterized protein
STRINGXP_006478977.11e-156(Citrus sinensis)
STRINGXP_006443285.11e-156(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-46ERF family protein