PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022291m
Common NameCICLE_v10022291mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 206aa    MW: 22238.1 Da    PI: 6.885
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022291mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.85.9e-4191091100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +kll+++p+++r da+ sl+yeA ar+rdP+yG+vg+i +lqqq+ +l+ae
  Ciclev10022291m   9 PCGACKFLRRKCVKGCVFAPYFDADQgTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVVNLQAE 102
                      7*************************88****************************************************************** PP

           DUF260  94 lallkee 100
                      la ++++
  Ciclev10022291m 103 LAFTQAR 109
                      **99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.9438110IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-409107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSANNGGGPC GACKFLRRKC VKGCVFAPYF DADQGTTHFA AVHKVFGASN ASKLLSRIPP  60
HKRLDAVVSL CYEAMARTRD PIYGCVGHIV ALQQQVVNLQ AELAFTQARL SILQRLPMAS  120
AAQDQSTSPC SLYSSSEMVS TADMASGYNI SMQFDPLQQQ QTSTDQTSSF NPFDQEIDDG  180
DLQALAREFV SKYLPGVKLQ PSNSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4051037104LOB family transfactor Ramosa2.1
5ly0_B4e-4051037104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445238.21e-152LOB domain-containing protein 19 isoform X1
RefseqXP_006490937.11e-152LOB domain-containing protein 19
SwissprotO813222e-69LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2H5NPB41e-150A0A2H5NPB4_CITUN; Uncharacterized protein
TrEMBLV4TDR11e-150V4TDR1_9ROSI; Uncharacterized protein
STRINGXP_006490937.11e-151(Citrus sinensis)
STRINGXP_006445238.11e-151(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.17e-58LOB domain-containing protein 19