PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022303m
Common NameCICLE_v10022303mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 204aa    MW: 23272.9 Da    PI: 8.4864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022303mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.67e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l ++++ +G ++Wk +a + g++R++k+c++rw++yl
  Ciclev10022303m 23 RGAWTAEEDRKLTEYIEIHGAKRWKNVATESGLNRCGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding49.59.8e-1676121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Ciclev10022303m  76 RGNISDDEEDLILRLHKLLGSR-WSLIAGRLP-GRTDNEIKNYWNSHL 121
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8411874IPR017930Myb domain
SuperFamilySSF466898.44E-2922117IPR009057Homeodomain-like
SMARTSM007172.4E-162272IPR001005SANT/Myb domain
PfamPF002496.7E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-252477IPR009057Homeodomain-like
CDDcd001676.97E-122570No hitNo description
SMARTSM007171.2E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129419.9375125IPR017930Myb domain
PfamPF002493.2E-1476121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2478126IPR009057Homeodomain-like
CDDcd001677.98E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAPTKSNNNN NNNDASGKNV VNRGAWTAEE DRKLTEYIEI HGAKRWKNVA TESGLNRCGK  60
SCRLRWLNYL RPNIKRGNIS DDEEDLILRL HKLLGSRWSL IAGRLPGRTD NEIKNYWNSH  120
LSKKINHKQK TPQQPQQPAT TRLTVPENTS EIAPVNDEGG RQIANSEVNL DFDFSTEGLC  180
GLDWVNKFLQ LDDDHLWLTD QQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-282112525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440271.11e-149transcription factor MYB114
SwissprotQ9LTF71e-52MYB82_ARATH; Transcription factor MYB82
TrEMBLV4TUD91e-148V4TUD9_9ROSI; Uncharacterized protein
STRINGXP_006440271.11e-149(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-52myb domain protein 82