PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022336m
Common NameCICLE_v10021501mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 200aa    MW: 21973.6 Da    PI: 7.0335
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022336mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17130182254
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+
  Ciclev10022336m 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 182
                      788899**********************************************8 PP
2HD-ZIP_I/II80.23.3e-26130183154
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                      +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR 
  Ciclev10022336m 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARL 183
                      69***************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.2E-381101IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.8E-18108182IPR009057Homeodomain-like
SuperFamilySSF466891.03E-17117182IPR009057Homeodomain-like
PROSITE profilePS5007116.228126182IPR001356Homeobox domain
SMARTSM003891.6E-14128190IPR001356Homeobox domain
CDDcd000863.25E-16130183No hitNo description
PfamPF000464.3E-15130182IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGEKDDGLGL SLSLGCAARN EPSLRLNHMP LSSSQSMQNH HKRSPWTELF HSSDRNSDTR  60
SFLRGIDVNQ APTVADCEEE NGVSSPNSTV SSISGKRSER EPIGDETEAE RASCSRGSDD  120
EDGGAGDASR KKLRLSKEQS LLLEETFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR  180
ARLVICGFLM GIVVIVLNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445396.11e-130homeobox-leucine zipper protein ATHB-4
RefseqXP_006464444.11e-130homeobox-leucine zipper protein ATHB-4 isoform X1
SwissprotP466021e-62HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLV4VYT91e-143V4VYT9_9ROSI; Uncharacterized protein
STRINGXP_006464444.11e-129(Citrus sinensis)
STRINGXP_006445396.11e-129(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.18e-36homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]