PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022365m
Common NameCICLE_v10022365mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 196aa    MW: 22641.2 Da    PI: 9.3972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022365mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182479256
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++++f++eq++ Le+ Fe+ + ++  +++ + A++lgL+ rqV +WFqN+Ra++k
  Ciclev10022365m 24 KNKRRFSDEQIRLLESIFESeSTKLEPRKKMQVATELGLQPRQVAIWFQNKRARWK 79
                     56789**************88**********************************9 PP
2HD-ZIP_I/II121.63.9e-3925116292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +krr+s+eq++lLE+ Fe+e+ kLep++K+++a+eLglqprqva+WFqn+RAR+k+kq+E+dy++L+++yd+l++  e+L ke+e+L  el+
  Ciclev10022365m  25 NKRRFSDEQIRLLESIFESEStKLEPRKKMQVATELGLQPRQVAIWFQNKRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLELQ 116
                      79****************9999****************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-161782IPR009057Homeodomain-like
PROSITE profilePS5007117.1672081IPR001356Homeobox domain
SMARTSM003897.8E-162285IPR001356Homeobox domain
PfamPF000461.1E-152479IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-172587IPR009057Homeodomain-like
CDDcd000867.70E-132982No hitNo description
PRINTSPR000313.0E-55261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000313.0E-56177IPR000047Helix-turn-helix motif
PfamPF021833.3E-1581122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MIERRKDDSA ASPEAKRKKK SKMKNKRRFS DEQIRLLESI FESESTKLEP RKKMQVATEL  60
GLQPRQVAIW FQNKRARWKS KQIEHDYAQL RANYDSLASG FESLIKEKES LLLELQMLNE  120
QLGKSDDEIN GVGKDLKRSD WSSSNRLNNN DNNDNNKSVD DFIASSEKWF NEDSGGLLDP  180
STSSSPQSHW LNFWV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319RRKDDSAASPEAKRKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441208.11e-139homeobox-leucine zipper protein ATHB-12 isoform X2
SwissprotP468975e-40ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLV4T2M41e-137V4T2M4_9ROSI; Uncharacterized protein
STRINGXP_006441208.11e-138(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-32homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]