PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10022371m

Common Name

CICLE_v10022371mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 195aa MW: 21099.8 Da PI: 7.8363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10022371m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++C++apyfp e+p+kf nvhk+FGasn++kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el Ciclev10022371m 11 PCAACKFLRRKCVPGCIFAPYFPPEEPQKFVNVHKIFGASNMTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVHRLQKEL 104 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Ciclev10022371m 105 DSANA 109 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.673	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MASSSNSYNS PCAACKFLRR KCVPGCIFAP YFPPEEPQKF VNVHKIFGAS NMTKLLNDLL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVHRL QKELDSANAD LIRYACNEIP 120 PGSQLPAPAP LSVSSIHPVI PRQRPIRIGN EGEGFYQPPS AYTHPSYILP WNDNPSPSGD 180 INHGGGGGGG QGNM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-67	2	119	2	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-67	2	119	2	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439893.1	1e-142	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024044702.1	1e-142	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_024044703.1	1e-142	protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	6e-74	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	V4SZ79	1e-141	V4SZ79_9ROSI; Uncharacterized protein
STRING	XP_006439893.1	1e-142	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-76	LBD family protein

Link Out ? help Back to Top
Phytozome	Ciclev10022371m
Entrez Gene	18046016

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]