PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022410m
Common NameCICLE_v10022410mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 191aa    MW: 21284.7 Da    PI: 6.5148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022410mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183888155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a+ +l+g
  Ciclev10022410m 38 PVYRGVRKRR-WGKWVSEIREPRK---KTRIWLGSFPVPEMAARAYDVAAYCLKG 88
                     68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-123888IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-213998IPR016177DNA-binding domain
SMARTSM003808.1E-3639102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-313997IPR001471AP2/ERF domain
PROSITE profilePS5103223.7883996IPR001471AP2/ERF domain
CDDcd000182.69E-314097No hitNo description
PRINTSPR003671.4E-124051IPR001471AP2/ERF domain
PRINTSPR003671.4E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEQQPYTYTE HELTDSATAT ATAIHRKSSS QTGGTRHPVY RGVRKRRWGK WVSEIREPRK  60
KTRIWLGSFP VPEMAARAYD VAAYCLKGRK AQLNFPDKVE ALPRPSTRAA RDIQEAAAKA  120
AHAGLISSEK SDVSESDGDD FWGEIELPEL MNGGWYSNSC GWTFSCDTTS TWIDEDAQPQ  180
EQQPPSMACL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-173496972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444825.11e-141ethylene-responsive transcription factor ERF023
RefseqXP_006495413.11e-141ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-58ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A067H6E41e-140A0A067H6E4_CITSI; Uncharacterized protein
TrEMBLA0A2H5P0471e-140A0A2H5P047_CITUN; Uncharacterized protein
TrEMBLV4U1Y31e-140V4U1Y3_9ROSI; Uncharacterized protein
STRINGXP_006495413.11e-140(Citrus sinensis)
STRINGXP_006444825.11e-140(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-60ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]