PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022438m
Common NameCICLE_v10022438mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 188aa    MW: 20414.8 Da    PI: 5.1031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022438mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-173483255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++GVr ++ +g++v+eIr p e   ++r++lg+fg+ae+Aa+a++ a+ +l+g
  Ciclev10022438m 34 PFRGVRKRR-WGSYVSEIRLPGE---KTRIWLGSFGSAEKAARAYDSAAFYLKG 83
                     69****887.**********944...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.9683491IPR001471AP2/ERF domain
SMARTSM003802.3E-313497IPR001471AP2/ERF domain
PfamPF008472.2E-103583IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-183593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-273593IPR001471AP2/ERF domain
PRINTSPR003672.5E-83546IPR001471AP2/ERF domain
CDDcd000187.34E-273593No hitNo description
PRINTSPR003672.5E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSVTTQTQEP SQLQPGSSTS KPGSKKRTRQ NDTPFRGVRK RRWGSYVSEI RLPGEKTRIW  60
LGSFGSAEKA ARAYDSAAFY LKGNLATLNF PASAGALPRP ESCSRKDIQV AAAKAAALVE  120
MGDRIESECS GSGGEPDCGD WWERETTASD EVKVAPLPSP PRFDSDIGEL YCWMDDDNFL  180
LGSCLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1435911572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12441KKRTRQNDTPFRGVRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441807.21e-136ethylene-responsive transcription factor ERF023
TrEMBLV4TNP41e-134V4TNP4_9ROSI; Uncharacterized protein
STRINGXP_006441807.11e-135(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2055856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.13e-28ERF family protein