PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10022564m

Common Name

CICLE_v10022564mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 171aa MW: 19702.1 Da PI: 8.843

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10022564m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.3	4e-42	6	132	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 G+rF+Pt++e+++++L++k++g+ ++ ++i++++i+ +ePw+Lp ++++ +++ewyfFs+ +kkya+++r r+tk g Wk tg d+++ ++ Ciclev10022564m 6 LGYRFRPTEDEIITYFLQNKIHGHASRV-RAINTLNICAFEPWELPeQAATPDDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDN 98 59*********************999.89***********445555889**********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvf+kg+ +k++kt+Wv+hey+ Ciclev10022564m 99 cGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHS 132 88889*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.795	4	151	IPR003441	NAC domain
SuperFamily	SSF101941	1.05E-44	6	149	IPR003441	NAC domain
Pfam	PF02365	1.2E-21	7	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MDYNCLGYRF RPTEDEIITY FLQNKIHGHA SRVRAINTLN ICAFEPWELP EQAATPDDEE 60 WYFFSELQKK YANSDRVDRT TKVGSWKVTG GDRQIWDNCG KEVIGVKKNL VFHKGHGSKA 120 KKTSWVIHEY HSSKASIHQK PYYVLCRLRG KLDDKPENYS RGESSGHAGF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-26	7	148	20	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-26	7	148	20	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-26	7	148	20	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-26	7	148	20	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-26	7	148	23	165	NAC domain-containing protein 19
3swm_B	1e-26	7	148	23	165	NAC domain-containing protein 19
3swm_C	1e-26	7	148	23	165	NAC domain-containing protein 19
3swm_D	1e-26	7	148	23	165	NAC domain-containing protein 19
3swp_A	1e-26	7	148	23	165	NAC domain-containing protein 19
3swp_B	1e-26	7	148	23	165	NAC domain-containing protein 19
3swp_C	1e-26	7	148	23	165	NAC domain-containing protein 19
3swp_D	1e-26	7	148	23	165	NAC domain-containing protein 19
4dul_A	1e-26	7	148	20	162	NAC domain-containing protein 19
4dul_B	1e-26	7	148	20	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006491409.1	1e-127	NAC domain-containing protein 96-like
TrEMBL	V4TC69	1e-126	V4TC69_9ROSI; Uncharacterized protein
STRING	XP_006491409.1	1e-126	(Citrus sinensis)
STRING	XP_006444688.1	1e-126	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18606	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	7e-40	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Ciclev10022564m
Entrez Gene	18047064